Workshop
ICML 2020 Workshop on Computational Biology
Workshop CompBio · Delasa Aghamirzaie · Alexander Anderson · Elham Azizi · Abdoulaye BanirĂ© Diallo · Cassandra Burdziak · Jill Gallaher · Anshul Kundaje · Dana Pe'er · Sandhya Prabhakaran · Amine Remita · Mark Robertson-Tessi · Wesley Tansey · Julia Vogt · Yubin Xie
Fri 17 Jul, 6 a.m. PDT
Keywords: Causality Deep Learning Representation Learning Computational Biology Machine Learning computational genomics computational neuroscience computational pathology computational radiology evolutionary biology population genomics phenomics ecology cancer biology
The workshop will showcase recent research in the field of Computational Biology. Computational biology is an interdisciplinary field that develops and applies analytical methods, mathematical and statistical modeling and simulation to analyze and interpret vast collections of biological data, such as genetic sequences, cellular features or protein structures, and imaging datasets to make new predictions towards clinical response, discover new biology or aid drug discovery. The availability of high-dimensional data, at multiple spatial and temporal resolutions has made machine learning and deep learning methods increasingly critical for computational analysis and interpretation of the data. Conversely, biological data has also exposed unique challenges and problems that call for the development of new machine learning methods.
This workshop aims to bring together researchers working at the unique intersection of Machine Learning and Biology that include areas (and not limited to) such as computational genomics, neuroscience, pathology, radiology, evolutionary biology, population genomics, phenomics, ecology, cancer biology, causality, and representation learning and disentanglement to present recent advances and open questions to the ML community.
The workshop is a sequel to the WCB workshops we organized in the last four years ICML 2019, Long Beach , Joint ICML and IJCAI 2018, Stockholm , ICML 2017, Sydney and ICML 2016, New York as well as Workshop on Bioinformatics and AI at IJCAI 2015 Buenos Aires, IJCAI 2016 New York, IJCAI 2017 Melbourne which had excellent line-ups of talks and was well-received by the community. Every year, we received 60+ submissions. After multiple rounds of rigorous reviewing around 50 submissions were selected from which the best set of papers were chosen for Contributed talks and Spotlights and the rest were invited as Posters. We have a steadfast and growing base of reviewers making up the Program Committee. For the past two editions, a special issue of Journal of Computational Biology has been released with extended versions of a select set of accepted papers.
We invited Thomas Fuchs, Debora Marks, Fabian Theis, Olga Troyanskaya. We have received funding confirmation from PAIGE and Amazon Web Services that we intend to use for student travel awards. In past years, we have also been able to provide awards for the best poster/paper and partially contribute to the student registration fee.
Schedule
Fri 5:50 a.m. - 6:00 a.m.
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Opening Remarks - Dana Pe'er
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Opening Remarks
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Fri 6:00 a.m. - 6:25 a.m.
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Invited Talk 1: Fabian Theis
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Invited Talk
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SlidesLive Video |
Workshop CompBio 🔗 |
Fri 6:25 a.m. - 6:30 a.m.
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Q&A after invited talk 1
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Q&A
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Fri 6:30 a.m. - 6:45 a.m.
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Contributed Talk 1 - Jacob C. Kimmel
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Contributed Talk
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SlidesLive Video |
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Fri 6:45 a.m. - 6:50 a.m.
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Q&A after contributed talk 1
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Q&A
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Fri 6:50 a.m. - 6:55 a.m.
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Spotlight Set 1-1 : Neha Prasad
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Spotlight
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Fri 6:55 a.m. - 7:00 a.m.
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Spotlight Set 1-2: Lingfei Wang
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Spotlight
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SlidesLive Video |
Workshop CompBio 🔗 |
Fri 7:00 a.m. - 7:05 a.m.
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Spotlight Set 1-3 : Kexin Huang
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Spotlight
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SlidesLive Video |
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Fri 7:05 a.m. - 7:10 a.m.
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Spotlight Set 1-4 : Leander Dony
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Spotlight
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SlidesLive Video |
Workshop CompBio 🔗 |
Fri 7:10 a.m. - 7:15 a.m.
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Spotlight Set 1-5 : Mohammad Lotfollahi
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Spotlight
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SlidesLive Video |
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Fri 7:15 a.m. - 7:30 a.m.
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Break
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Workshop CompBio 🔗 |
Fri 7:30 a.m. - 7:55 a.m.
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Invited Talk 2: Olga Troyanskaya
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Invited Talk
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Workshop CompBio 🔗 |
Fri 7:55 a.m. - 8:00 a.m.
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Q&A
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Q&A
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Fri 8:00 a.m. - 8:15 a.m.
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Contributed Talk 2: Geoffrey Fudenberg
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Contributed Talk
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SlidesLive Video |
Workshop CompBio 🔗 |
Fri 8:15 a.m. - 8:20 a.m.
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Q&A after contributed talk
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Q&A
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Fri 8:20 a.m. - 8:25 a.m.
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Highlight 1: Sanjiv Kumar Dwivedi
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Paper Highlight
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SlidesLive Video |
Workshop CompBio 🔗 |
Fri 8:25 a.m. - 8:30 a.m.
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Highlight 2: Iman Deznaby
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Paper Highlight
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SlidesLive Video |
Workshop CompBio 🔗 |
Fri 8:30 a.m. - 8:35 a.m.
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Highlight 3: Christian Matek
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Paper Highlight
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SlidesLive Video |
Workshop CompBio 🔗 |
Fri 8:35 a.m. - 8:40 a.m.
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Highlight 4: Serghei Mangul
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Paper Highlight
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Fri 8:40 a.m. - 8:45 a.m.
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Highlight 5: Shibiao Wan
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Paper Highlight
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SlidesLive Video |
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Fri 8:45 a.m. - 8:50 a.m.
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Highlight 6: William Hsu
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Paper Highlight
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SlidesLive Video |
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Fri 8:50 a.m. - 8:55 a.m.
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Highlight 7: Jacob Schreiber
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Paper Highlight
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SlidesLive Video |
Workshop CompBio 🔗 |
Fri 8:55 a.m. - 10:00 a.m.
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Poster session and lunch break 1
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Poster session and lunch break
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Fri 10:00 a.m. - 11:00 a.m.
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Poster session and lunch break 2
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Poster session and lunch break
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Fri 11:00 a.m. - 11:25 a.m.
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Invited Talk 3: Thomas Fuchs
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Invited Talk
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Workshop CompBio 🔗 |
Fri 11:25 a.m. - 11:30 a.m.
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Q&A after invited talk 3
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Q&A
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Workshop CompBio 🔗 |
Fri 11:30 a.m. - 11:45 a.m.
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Contributed Talk 3: Guillaume Jaume
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Contributed Talk 3
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SlidesLive Video |
Workshop CompBio 🔗 |
Fri 11:45 a.m. - 11:50 a.m.
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Q&A after contributed talk 3
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Q&A after contributed talk
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Workshop CompBio 🔗 |
Fri 11:50 a.m. - 11:55 a.m.
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Spotlight Set 3-1: Kathleen Lois Foster
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Spotlight
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SlidesLive Video |
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Fri 11:55 a.m. - 12:00 p.m.
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Spotlight Set 3-2 : Jacob Schreiber
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Spotlight
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SlidesLive Video |
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Fri 12:00 p.m. - 12:05 p.m.
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Spotlight Set 3-3 : Nic Fishman
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Spotlight
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SlidesLive Video |
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Fri 12:05 p.m. - 12:10 p.m.
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Spotlight Set 3-4 : Alex Karollus
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Spotlight
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SlidesLive Video |
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Fri 12:10 p.m. - 12:15 p.m.
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Spotlight Set 3-5 : Pinar Demetci
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Spotlight
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SlidesLive Video |
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Fri 12:15 p.m. - 1:15 p.m.
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Poster Session and Break 3
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Poster session and lunch break
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Fri 1:15 p.m. - 1:40 p.m.
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Invited Talk 4: Debora Marks
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Invited Talk
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Workshop CompBio 🔗 |
Fri 1:40 p.m. - 1:45 p.m.
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Q&A after invited talk 4
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Q&A
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Fri 1:45 p.m. - 2:00 p.m.
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Contributed Talk 4: Minxing Pang
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Contributed Talk
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SlidesLive Video |
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Fri 2:00 p.m. - 2:05 p.m.
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Q&A after contributed talk 4
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Q&A
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Fri 2:05 p.m. - 2:30 p.m.
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Award Ceremony & Closing Remarks
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Close
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