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Workshop
Discrete Diffusion Posterior Sampling for Protein Design
Mert Cemri · Ajil Jalal · Kannan Ramchandran
Poster
Tue 4:30 SurfPro: Functional Protein Design Based on Continuous Surface
Zhenqiao Song · Tinglin Huang · Lei Li · Wengong Jin
Poster
Thu 4:30 Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency
chentong wang · Yannan Qu · Zhangzhi Peng · Yukai Wang · Hongli Zhu · dachuan chen · Longxing Cao
Poster
Tue 2:30 CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model
Milong Ren · Tian Zhu · Haicang Zhang
Workshop
Extrapolative Protein Design through Triplet-based Preference Learning
Mostafa Karimi · Sharmi Banerjee · Tommi Jaakkola · Bella Dubrov · Shang Shang · Ron Benson
Workshop
ProtMamba: a homology-aware but alignment-free protein state space model
Damiano Sgarbossa · Cyril Malbranke · Anne-Florence Bitbol
Poster
Wed 2:30 Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design
Andrew Campbell · Jason Yim · Regina Barzilay · Tom Rainforth · Tommi Jaakkola
Workshop
Compressing the Latent Space of Single-Sequence Protein Predictors for Multimodal Generation
Amy X. Lu · Wilson Yan · Vladimir Gligorijevic · Pieter Abbeel · Kevin Yang · Nathan Frey
Workshop
CodonMPNN for Organism Specific and Codon Optimal Inverse Folding
Hannes Stärk · Umesh Padia · Julia Balla · Cameron Diao
Workshop
Enhancing Protein Design Robustness through Noise-Informed Sequence Design
Yehlin Cho · Sergey Ovchinnikov · Christopher Frank
Poster
Thu 2:30 Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design
Leo Klarner · Tim G. J. Rudner · Garrett Morris · Charlotte Deane · Yee-Whye Teh
Workshop
Cramming Protein Language Model Training in 24 GPU Hours
Nathan Frey · Taylor Joren · Aya Ismail · Allen Goodman · Richard Bonneau · Kyunghyun Cho · Vladimir Gligorijevic