Workshop
ICML 2023 Workshop on Computational Biology
Yubin Xie · Cassandra Burdziak · Dana Pe'er · Debora Marks · Alexander Anderson · Elham Azizi · Abdoulaye BanirĂ© Diallo · Wesley Tansey · Bianca Dumitrascu · Sandhya Prabhakaran · Maria Brbic · Mafalda Dias · Cameron Park · Pascal Notin · Joy Fan · Ruben Weizman · Lingting Shi · Siyu He · Yinuo Jin
Meeting Room 314
Sat 29 Jul, noon PDT
Each year, machine learning (ML) advances are successfully translated to develop systems we now use regularly, such as speech recognition platforms or translation software. The COVID-19 pandemic has highlighted the urgency for translating these advances to the domain of biomedicine. Biological data has unique properties (high dimensionality, degree of noise and variability), and therefore poses new challenges and opportunities for methods development. To facilitate progress toward long-term therapeutic strategies or basic biological discovery, it is critical to bring together practitioners at the intersection of computation, ML, and biology.The ICML Workshop on Computational Biology (WCB) will highlight how ML approaches can be tailored to making both translational and basic scientific discoveries with biological data, such as genetic sequences, cellular features or protein structures and imaging datasets, among others. This workshop thus aims to bring together interdisciplinary ML researchers working in areas such as computational genomics; neuroscience; metabolomics; proteomics; bioinformatics; cheminformatics; pathology; radiology; evolutionary biology; population genomics; phenomics; ecology, cancer biology; causality; representation learning and disentanglement to present recent advances and open questions to the machine learning community. We especially encourage interdisciplinary submissions that might not neatly fit into one of these categories.
Schedule
Sat 12:00 p.m. - 12:05 p.m.
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Opening remarks
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Opening remarks
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SlidesLive Video |
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Sat 12:05 p.m. - 12:40 p.m.
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Geometric ML for designing new molecules
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Invited Speaker #1
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SlidesLive Video |
Michael M. Bronstein 🔗 |
Sat 12:40 p.m. - 1:00 p.m.
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Genomic Interpreter: A Hierarchical Genomic Deep Neural Network with 1D Shifted Window Transformer
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Contributed Talk
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SlidesLive Video |
William Beardall · Zehui Li 🔗 |
Sat 1:00 p.m. - 1:15 p.m.
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Spotlight Talks
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Spotlights
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SlidesLive Video |
Claudia Skok Gibbs · Eric Sun 🔗 |
Sat 1:15 p.m. - 1:45 p.m.
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Coffee Break
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Sat 1:45 p.m. - 2:05 p.m.
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HiC2Self: Self-supervised Hi-C contact map denoising
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Contributed Talk
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SlidesLive Video |
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Sat 2:05 p.m. - 2:25 p.m.
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Denoising single-cell RNA-seq data using Feature Propagation
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Contributed Talk
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SlidesLive Video |
Sukwon Yun 🔗 |
Sat 2:25 p.m. - 2:50 p.m.
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Spotlight Talks
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Spotlights
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SlidesLive Video |
Kristina Ulicna · Truong Son Hy · Cuong Nguyen · Kavi Gupta · Simon Mathis 🔗 |
Sat 2:50 p.m. - 4:30 p.m.
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Poster Session #1 and Lunch Break
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Poster Session
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Sat 4:30 p.m. - 5:05 p.m.
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Veridical data science for reliable, reproducible, and transparent data analysis and decision-making
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Invited Speaker #2
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SlidesLive Video |
Bin Yu 🔗 |
Sat 5:05 p.m. - 5:25 p.m.
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Spotlight Talks
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Spotlights
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SlidesLive Video |
Zhongliang Zhou · Jun Xia · Alex Tseng · Kemal Inecik 🔗 |
Sat 5:25 p.m. - 6:00 p.m.
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Invited talk: Su-In Lee
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Invited Speaker #3
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SlidesLive Video |
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Sat 6:00 p.m. - 7:15 p.m.
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Poster Session #2
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Poster Session
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Sat 7:15 p.m. - 7:30 p.m.
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Closing Remarks
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Closing Remarks
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SlidesLive Video |
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