Abstract: Transfer operators provide a rich framework for representing the dynamics of very general, nonlinear dynamical systems. When interacting with reproducing kernel Hilbert spaces (RKHS), descriptions of dynamics often incur prohibitive data storage requirements, motivating dataset sparsification as a precursory step to computation. Further, in practice, data is available in the form of trajectories, introducing correlation between samples. In this work, we present a method for sparse learning of transfer operators from $\beta$-mixing stochastic processes, in both discrete and continuous time, and provide sample complexity analysis extending existing theoretical guarantees for learning from non-sparse, i.i.d. data. In addressing continuous-time settings, we develop precise descriptions using covariance-type operators for the infinitesimal generator that aids in the sample complexity analysis. We empirically illustrate the efficacy of our sparse embedding approach through deterministic and stochastic nonlinear system examples.