Bridging Time and Frequency: A Joint Modeling Framework for Irregular Multivariate Time Series Forecasting

Irregular multivariate time series (IMTS) forecasting is challenging due to non-uniform sampling and variable asynchronicity. These irregularities violate the equidistant assumptions of standard models, hindering local temporal modeling and rendering classical frequency-domain methods ineffective for capturing global periodic structures. To address this challenge, we propose TFMixer, a joint time–frequency modeling framework for IMTS forecasting. Specifically, TFMixer incorporates a Global Frequency Module that employs a learnable Non-Uniform Discrete Fourier Transform (NUDFT) to directly extract spectral representations from irregular timestamps. In parallel, the Local Time Module introduces a query-based patch attention mechanism to adaptively aggregate informative temporal segments and alleviate information density imbalance. Finally, TFMixer fuses the time-domain and frequency-domain representations to generate forecasts and further leverages inverse NUDFT for explicit seasonal extrapolation. Extensive experiments on real-world IMTS benchmarks demonstrate the effectiveness and robustness of TFMixer under irregular sampling and missing data.