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The 2021 schedule is still incomplete
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Sat Jul 24 05:43 AM -- 05:44 AM (PDT)
Audio Test
Sat Jul 24 05:45 AM -- 05:50 AM (PDT)
Opening Remarks
Sat Jul 24 05:50 AM -- 06:25 AM (PDT)
Invited talk 1 - Lessons from the Pandemic for Machine Learning and Medical Imaging
Workshop CompBio · Carola-Bibiane Schönlieb · Michael Roberts
Sat Jul 24 06:25 AM -- 06:30 AM (PDT)
Invited Talk 1 Q&A
Sat Jul 24 06:30 AM -- 06:45 AM (PDT)
Contributed Talk 1 - Multigrate: single-cell multi-omic data integration
Workshop CompBio · Mohammad Lotfollahi
Sat Jul 24 06:45 AM -- 06:50 AM (PDT)
Contributed Talk 1 Q&A
Sat Jul 24 06:50 AM -- 06:55 AM (PDT)
Spotlight Set 1-1 | Statistical correction of input gradients for black box models trained with categorical input features
Workshop CompBio · Antonio Majdandzic
Sat Jul 24 06:55 AM -- 07:00 AM (PDT)
Spotlight Set 1-2 | Opportunities and Challenges in Designing Genomic Sequences
Workshop CompBio · Mengyan Zhang
Sat Jul 24 07:00 AM -- 07:05 AM (PDT)
Spotlight Set 1-3 | pmVAE: Learning Interpretable Single-Cell Representations with Pathway Modules
Workshop CompBio · Stefan Stark
Sat Jul 24 07:05 AM -- 07:10 AM (PDT)
Spotlight Set 1-5 | Deep Contextual Learners for Protein Networks
Workshop CompBio · Michelle Li
Sat Jul 24 07:10 AM -- 07:15 AM (PDT)
Spotlight Set 1-4 | Multimodal data visualization, denoising and clustering with integrated diffusion
Workshop CompBio · MANIK KUCHROO
Sat Jul 24 07:15 AM -- 07:30 AM (PDT)
Break 1
Sat Jul 24 07:30 AM -- 07:31 AM (PDT)
Introduction for Session 2
Sat Jul 24 07:31 AM -- 07:56 AM (PDT)
Invited talk 2 - Anomaly detection to find rare phenotypes
Workshop CompBio · Quaid Morris
Sat Jul 24 07:56 AM -- 08:00 AM (PDT)
Invited Talk 2 Q&A
Sat Jul 24 08:00 AM -- 08:15 AM (PDT)
Contributed Talk 2 - Light Attention Predicts Protein Location from the Language of Life
Workshop CompBio · Hannes Stärk
Sat Jul 24 08:15 AM -- 08:20 AM (PDT)
Contributed Talk 2 Q&A
Sat Jul 24 08:20 AM -- 08:25 AM (PDT)
Highlight 1 | Representation of Features as Images with Neighborhood Dependencies forCompatibility with Convolutional Neural Networks
Workshop CompBio · Omid Bazgir
Sat Jul 24 08:25 AM -- 08:30 AM (PDT)
Highlight 2 | VoroCNN: Deep Convolutional Neural Network Built on 3D Voronoi Tessellation of Protein Structures
Workshop CompBio · Ilia Igashov
Sat Jul 24 08:30 AM -- 08:35 AM (PDT)
Highlight 3 | DIVERSE: Bayesian Data IntegratiVE learning for precise drug ResponSE prediction
Workshop CompBio · Betul Guvenc Paltun
Sat Jul 24 08:35 AM -- 08:40 AM (PDT)
Highlight 4 | Spherical Convolutions on Molecular Graphs for Protein Model Quality Assessment
Workshop CompBio · Nikita Pavlichenko
Sat Jul 24 08:40 AM -- 08:45 AM (PDT)
Highlight 5 | Data-driven Experimental Prioritization via Imputation and Submodular Optimization
Workshop CompBio · Jacob Schreiber
Sat Jul 24 08:45 AM -- 08:50 AM (PDT)
Highlight 6 | Data Inequality, Machine Learning and Health Disparity
Workshop CompBio · Yan Gao
Sat Jul 24 08:50 AM -- 08:55 AM (PDT)
Highlight 7 | Deep neural networks identify sequence context features predictive of transcription factor binding
Workshop CompBio · AN ZHENG
Sat Jul 24 09:00 AM -- 10:00 AM (PDT)
Poster Session 1 and Break
Sat Jul 24 10:00 AM -- 11:00 AM (PDT)
Poster Session 2 and Break
Sat Jul 24 11:00 AM -- 11:01 AM (PDT)
Introduction for Session 3
Sat Jul 24 11:01 AM -- 11:26 AM (PDT)
Invited talk 3 - Every Patient Deserves Their Own Equation
Workshop CompBio
Sat Jul 24 11:26 AM -- 11:30 AM (PDT)
Invited Talk 3 Q&A
Sat Jul 24 11:30 AM -- 11:45 AM (PDT)
Contributed Talk 3 - Reconstructing unobserved cellular states from paired single-cell lineage tracing and transcriptomics data
Workshop CompBio · Khalil Ouardini
Sat Jul 24 11:45 AM -- 11:50 AM (PDT)
Contributed Talk 3 Q&A
Sat Jul 24 11:50 AM -- 11:55 AM (PDT)
Spotlight Set 2-1 | Equivariant Graph Neural Networks for 3D Macromolecular Structure
Workshop CompBio · Bowen Jing
Sat Jul 24 11:55 AM -- 12:00 PM (PDT)
Spotlight Set 2-2 | Viral Evolution and Antibody Escape Mutations using Deep Generative Models
Workshop CompBio · Nicole Thadani
Sat Jul 24 12:00 PM -- 12:05 PM (PDT)
Spotlight Set 2-3 | Multi-Scale Representation Learning on Proteins
Workshop CompBio · Charlotte Bunne
Sat Jul 24 12:05 PM -- 12:10 PM (PDT)
Spotlight Set 2-4 | Immuno-mimetic Deep Neural Networks (Immuno-Net)
Workshop CompBio · Ren Wang
Sat Jul 24 12:10 PM -- 12:15 PM (PDT)
Spotlight Set 2-5 | Gene expression evolution across species, organs and sexes in Drosophila
Workshop CompBio · Soumitra Pal
Sat Jul 24 12:15 PM -- 01:15 PM (PDT)
Poster Session 3 and Break
Sat Jul 24 01:15 PM -- 01:16 PM (PDT)
Introduction for Session 4
Sat Jul 24 01:16 PM -- 01:41 PM (PDT)
Invited talk 4 - Learning from evolution
Workshop CompBio ·
Sat Jul 24 01:41 PM -- 01:45 PM (PDT)
Invited Talk 4 Q&A
Sat Jul 24 01:45 PM -- 02:00 PM (PDT)
Contributed Talk 4 - A Bayesian Mutation-Selection Model of Evolutionary Constraints on Coding Sequences
Workshop CompBio · Berk Alpay
Sat Jul 24 02:00 PM -- 02:05 PM (PDT)
Contributed Talk 4 Q&A
Sat Jul 24 02:05 PM -- 02:20 PM (PDT)
Closing Remarks & Awards Ceremony
Identifying systematic variation in gene-gene interactions at the single-cell level by leveraging low-resolution population-level data
Elior Rahmani
Spherical Convolutions on Molecular Graphs for Protein Model Quality Assessment
Nikita Pavlichenko
Multigrate: single-cell multi-omic data integration
Anastasia Litinetskaya
Deconvolution of the T cell immune response using multi-modal learning
Felix Drost
Deep Contextual Learners for Protein Networks
Michelle Li
Integrating unpaired scRNA-seq and scATAC-seq with unequal cell type compositions
Ziqi Zhang
Viral Evolution and Antibody Escape Mutations using Deep Generative Models
Nicole Thadani
Light Attention Predicts Protein Location from the Language of Life
Hannes Stärk
Data Inequality, Machine Learning and Health Disparity
Yan Gao
VEGN: variant effect prediction with graph neural network
Carolin Lawrence
pmVAE: Learning Interpretable Single-Cell Representations with Pathway Modules
Stefan Stark
Opportunities and Challenges in Designing Genomic Sequences
Mengyan Zhang
Graph attribution methods applied to understanding immunogenicity in glycans
Somesh Mohapatra
Distance-Enhanced Graph Neural Network for Link Prediction
Yingce Xia
MultImp: Multiomics Generative Models for Data Imputation
Yining Jiao
APObind: A Dataset of Ligand Unbound Protein Conformations for Machine Learning Applications in De Novo Drug Design
Rishal Aggarwal
Simultaneous Selection of Multiple Important Single Nucleotide Polymorphisms in Familial Genome Wide Association Studies Data
Subhabrata Majumdar
Deep neural networks identify sequence context features predictive of transcription factor binding
AN ZHENG
Synthetic COVID-19 Chest X-ray Dataset for Computer-Aided Diagnosis
Hasib Zunair
Data-driven Experimental Prioritization via Imputation and Submodular Optimization
Jacob Schreiber
Statistical correction of input gradients for black box models trained with categorical input features
Antonio Majdandzic
Fingerprint VAE
Andrea Karlova · Andrea Karlova
NeuRL: Closed-form Inverse Reinforcement Learning for Neural Decoding
Joschka Boedecker
Prediction of RNA-protein Interactions Using a Nucleotide Language Model
Keisuke Yamada
Equivariant Graph Neural Networks for 3D Macromolecular Structure
Bowen Jing
Reference-free cell type annotation and phenotype characterisation in single cell RNA sequencing by learning geneset representations
Soroor Hediyeh-zadeh
Graph Representation Learning on Tissue-Specific Multi-Omics
Amine Amor
Neural message passing for joint paratope-epitope prediction
Alice Del Vecchio
Designing Interpretable Convolution-Based Hybrid Networks for Genomics
Rohan Ghotra
Reconstructing unobserved cellular states from paired single-cell lineage tracing and transcriptomics data
Khalil Ouardini
Gene expression evolution across species, organs and sexes in Drosophila
Soumitra Pal
Effective Surrogate Models for Protein Design with Bayesian Optimization
Nate Gruver
Exploring the latent space of deep generative models: Applications to G-protein coupled receptors
Lood van Niekerk
MultiMAP: Dimensionality Reduction and Integration of Multimodal Data
Mika Jain
Towards better understanding of developmental disorders from integration of spatial single-cell transcriptomics and epigenomics
Guojie Zhong
DynaMorph: self-supervised learning of morphodynamic states of live cells
Zhenqin Wu
Representation of Features as Images with Neighborhood Dependencies forCompatibility with Convolutional Neural Networks
Omid Bazgir
Representation learning of genomic sequence motifs via information maximization
Nicholas Lee
TCR-epitope binding affinity prediction using multi-head self attention model
Michael Cai
Multi-target optimization for drug discovery using generative models
Anirudh jain
Multimodal data visualization, denoising and clustering with integrated diffusion
Abhinav Godavarthi
VoroCNN: Deep Convolutional Neural Network Built on 3D Voronoi Tessellation of Protein Structures
Ilia Igashov
Prot-A-GAN: Automatic Protein Function Annotation using GAN-inspired Knowledge Graph Embedding
Bishnu Sarker
Semi-supervised Deconvolution of Spatial Transcriptomics in Breast Tumors
xueer chen
Drug Repurposing using Link Prediction on Knowledge Graphs
Martin Taraz
Improving confident peptide identifications across mass spectrometry runs by learning deep representations of TIMS-MS1 features
Soroor Hediyeh-zadeh
Immuno-mimetic Deep Neural Networks (Immuno-Net)
Ren Wang
Epiphany: Predicting the Hi-C Contact Map from 1D Epigenomic Data
Rui Yang