QuITE: Query-based Irregular Time-series Embedding

Irregular Multivariate Time Series (IMTS) arise naturally in many real-world domains, yet their irregular sampling patterns pose significant challenges for effective modeling. Existing approaches for IMTS fall into two categories: architecture-based and data-based methods. Architecture-based methods require specialized modeling for IMTS, limiting reuse of established Multivariate Time Series (MTS) models, data-based methods convert IMTS into regular time series through imputation or interpolation, often introducing artificial values that distort temporal dynamics. In this work, we propose a novel input-embedding-based approach for modeling the IMTS. Our method preserves the original MTS backbone and operates directly on IMTS. We introduce QuITE (Query-based Irregular Time-series Embedding), a simple yet effective, backbone-agnostic embedding module that enables MTS models to directly process IMTS. QuITE leverages a set of learnable query tokens to aggregate irregular observations via a single self-attention layer, producing fixed-dimensional latent representations. Extensive experiments on real-world benchmarks demonstrate that QuITE consistently improves the performance of existing MTS models, achieving average relative performance gains up to 45.9% across diverse datasets and backbone architectures.