Ibex: Pan-immunoglobulin structure prediction
Frederic Dreyer ⋅ Karolis Martinkus ⋅ Jan Ludwiczak ⋅ Brennan Abanades ⋅ Robert Alberstein ⋅ Pranav Rao ⋅ Jae Hyeon Lee ⋅ Richard Bonneau ⋅ Andrew Watkins ⋅ Franziska Seeger
Abstract
We introduce Ibex, an immunoglobulin protein structure prediction model that achieves state-of-the-art accuracy in modeling the binding domains of antibodies, nanobodies and T-cell receptors. Ibex can model both bound and unbound conformations of the protein, having been trained on labeled apo and holo pairs. Using a private dataset of hundreds of antibody structures, we evaluate the out-of-distribution performance of common structure prediction tools, showing improved robustness of Ibex compared to existing specialized structure prediction models.
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