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The workshop will showcase recent research in the field of Computational Biology. Computational biology is an interdisciplinary field that develops and applies analytical methods, mathematical and statistical modeling and simulation to analyze and interpret vast collections of biological data, such as genetic sequences, cellular features or protein structures, and imaging datasets to make new predictions towards clinical response, discover new biology or aid drug discovery. The availability of high-dimensional data, at multiple spatial and temporal resolutions has made machine learning and deep learning methods increasingly critical for computational analysis and interpretation of the data. Conversely, biological data has also exposed unique challenges and problems that call for the development of new machine learning methods.
This workshop aims to bring together researchers working at the unique intersection of Machine Learning and Biology that include areas (and not limited to) such as computational genomics, neuroscience, pathology, radiology, evolutionary biology, population genomics, phenomics, ecology, cancer biology, causality, and representation learning and disentanglement to present recent advances and open questions to the ML community.
The workshop is a sequel to the WCB workshops we organized in the last four years ICML 2019, Long Beach , Joint ICML and IJCAI 2018, Stockholm , ICML 2017, Sydney and ICML 2016, New York as well as Workshop on Bioinformatics and AI at IJCAI 2015 Buenos Aires, IJCAI 2016 New York, IJCAI 2017 Melbourne which had excellent line-ups of talks and was well-received by the community. Every year, we received 60+ submissions. After multiple rounds of rigorous reviewing around 50 submissions were selected from which the best set of papers were chosen for Contributed talks and Spotlights and the rest were invited as Posters. We have a steadfast and growing base of reviewers making up the Program Committee. For the past two editions, a special issue of Journal of Computational Biology has been released with extended versions of a select set of accepted papers.
We invited Thomas Fuchs, Debora Marks, Fabian Theis, Olga Troyanskaya. We have received funding confirmation from PAIGE and Amazon Web Services that we intend to use for student travel awards. In past years, we have also been able to provide awards for the best poster/paper and partially contribute to the student registration fee.
Fri 5:50 a.m. - 6:00 a.m.
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Opening Remarks - Dana Pe'er
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Opening Remarks
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Fri 6:00 a.m. - 6:25 a.m.
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Invited Talk 1: Fabian Theis
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Invited Talk
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SlidesLive Video » |
Workshop CompBio 🔗 |
Fri 6:25 a.m. - 6:30 a.m.
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Q&A after invited talk 1
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Q&A
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Fri 6:30 a.m. - 6:45 a.m.
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Contributed Talk 1 - Jacob C. Kimmel
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Contributed Talk
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SlidesLive Video » |
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Fri 6:45 a.m. - 6:50 a.m.
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Q&A after contributed talk 1
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Q&A
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Fri 6:50 a.m. - 6:55 a.m.
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Spotlight Set 1-1 : Neha Prasad ( Spotlight ) | Workshop CompBio 🔗 |
Fri 6:55 a.m. - 7:00 a.m.
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Spotlight Set 1-2: Lingfei Wang
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Spotlight
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SlidesLive Video » |
Workshop CompBio 🔗 |
Fri 7:00 a.m. - 7:05 a.m.
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Spotlight Set 1-3 : Kexin Huang
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Spotlight
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SlidesLive Video » |
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Fri 7:05 a.m. - 7:10 a.m.
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Spotlight Set 1-4 : Leander Dony
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Spotlight
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SlidesLive Video » |
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Fri 7:10 a.m. - 7:15 a.m.
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Spotlight Set 1-5 : Mohammad Lotfollahi
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Spotlight
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SlidesLive Video » |
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Fri 7:15 a.m. - 7:30 a.m.
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Break
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Fri 7:30 a.m. - 7:55 a.m.
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Invited Talk 2: Olga Troyanskaya ( Invited Talk ) | Workshop CompBio 🔗 |
Fri 7:55 a.m. - 8:00 a.m.
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Q&A
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Fri 8:00 a.m. - 8:15 a.m.
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Contributed Talk 2: Geoffrey Fudenberg
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Contributed Talk
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SlidesLive Video » |
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Fri 8:15 a.m. - 8:20 a.m.
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Q&A after contributed talk
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Q&A
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Fri 8:20 a.m. - 8:25 a.m.
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Highlight 1: Sanjiv Kumar Dwivedi
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Paper Highlight
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SlidesLive Video » |
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Fri 8:25 a.m. - 8:30 a.m.
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Highlight 2: Iman Deznaby
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Paper Highlight
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SlidesLive Video » |
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Fri 8:30 a.m. - 8:35 a.m.
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Highlight 3: Christian Matek
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Paper Highlight
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SlidesLive Video » |
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Fri 8:35 a.m. - 8:40 a.m.
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Highlight 4: Serghei Mangul ( Paper Highlight ) | Workshop CompBio 🔗 |
Fri 8:40 a.m. - 8:45 a.m.
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Highlight 5: Shibiao Wan
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Paper Highlight
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SlidesLive Video » |
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Fri 8:45 a.m. - 8:50 a.m.
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Highlight 6: William Hsu
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Paper Highlight
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SlidesLive Video » |
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Fri 8:50 a.m. - 8:55 a.m.
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Highlight 7: Jacob Schreiber
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Paper Highlight
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SlidesLive Video » |
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Fri 8:55 a.m. - 10:00 a.m.
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Poster session and lunch break 1
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Poster session and lunch break
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*[ protected link dropped ] |
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Fri 10:00 a.m. - 11:00 a.m.
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Poster session and lunch break 2 ( Poster session and lunch break ) | Workshop CompBio 🔗 |
Fri 11:00 a.m. - 11:25 a.m.
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Invited Talk 3: Thomas Fuchs
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Invited Talk
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Thomas Fuchs: Clinical-grade Artificial Intelligence: Hype and Hope for Cancer Care (Live only) |
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Fri 11:25 a.m. - 11:30 a.m.
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Q&A after invited talk 3
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Q&A
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Fri 11:30 a.m. - 11:45 a.m.
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Contributed Talk 3: Guillaume Jaume
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Contributed Talk 3
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SlidesLive Video » |
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Fri 11:45 a.m. - 11:50 a.m.
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Q&A after contributed talk 3
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Q&A after contributed talk
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Fri 11:50 a.m. - 11:55 a.m.
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Spotlight Set 3-1: Kathleen Lois Foster
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Spotlight
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SlidesLive Video » |
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Fri 11:55 a.m. - 12:00 p.m.
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Spotlight Set 3-2 : Jacob Schreiber
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Spotlight
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SlidesLive Video » |
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Fri 12:00 p.m. - 12:05 p.m.
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Spotlight Set 3-3 : Nic Fishman
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Spotlight
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SlidesLive Video » |
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Fri 12:05 p.m. - 12:10 p.m.
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Spotlight Set 3-4 : Alex Karollus
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Spotlight
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SlidesLive Video » |
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Fri 12:10 p.m. - 12:15 p.m.
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Spotlight Set 3-5 : Pinar Demetci
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Spotlight
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SlidesLive Video » |
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Fri 12:15 p.m. - 1:15 p.m.
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Poster Session and Break 3
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Poster session and lunch break
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*[ protected link dropped ] |
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Fri 1:15 p.m. - 1:40 p.m.
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Invited Talk 4: Debora Marks
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Invited Talk
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Presentation of the invited talk by Debora (Live only) |
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Fri 1:40 p.m. - 1:45 p.m.
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Q&A after invited talk 4
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Q&A
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Fri 1:45 p.m. - 2:00 p.m.
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Contributed Talk 4: Minxing Pang
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Contributed Talk
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SlidesLive Video » |
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Fri 2:00 p.m. - 2:05 p.m.
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Q&A after contributed talk 4
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Q&A
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Fri 2:05 p.m. - 2:30 p.m.
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Award Ceremony & Closing Remarks
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Close
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Author Information
Workshop CompBio (MSKCC)
Delasa Aghamirzaie (Illumina)
Alexander Anderson (Moffitt Cancer Center)
Elham Azizi (Columbia University)
Abdoulaye Baniré Diallo (Université du Québec à Montréal)
Cassandra Burdziak (Memorial Sloan Kettering Cancer Center)
Jill Gallaher (Moffitt Cancer Center)
Anshul Kundaje (Stanford University)
Dana Pe'er (Sloan Kettering Institute)
Sandhya Prabhakaran (Moffitt Cancer Centre)
Amine Remita (Bioinfo-UQAM | Université du Québec à Montréal)
Mark Robertson-Tessi (Moffitt Cancer Cente)
Wesley Tansey (columbia university)
Julia Vogt (ETH Zuerich)
Yubin Xie (Memorial Sloan Kettering Cancer Centre)
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